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  5. SymbC1.scaffold704.3

SymbC1.scaffold704.3 (704.3)


Aliases : 704.3

Description : Ion transport domain [Interproscan].


Gene families : OG_01_0000149 (OrthoFinder) Phylogenetic Tree(s): OG0000149_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold704.3
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold15779.1 15779.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold2188.7 2188.7 Ion transport domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold4029.4 4029.4 Ion transport domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold7358.1 7358.1 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0015099 nickel cation transmembrane transporter activity IEP Enrichment
BP GO:0015675 nickel cation transport IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0035444 nickel cation transmembrane transport IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 145 409
No external refs found!