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  5. SymbC1.scaffold6897.1

SymbC1.scaffold6897.1 (6897.1)


Aliases : 6897.1

Description : Tyrosine-protein kinase ephrin type A/B receptor-like; ABC-type glycine betaine transport system, substrate-binding domain [Interproscan].


Gene families : OG_01_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold6897.1
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1129.1 1129.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1273.15 1273.15 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.02 OrthoFinder
SymbC1.scaffold1634.2 1634.2 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold17395.1 17395.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1845.2 1845.2 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.03 OrthoFinder
SymbC1.scaffold197.7 197.7 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.06 OrthoFinder
SymbC1.scaffold197.9 197.9 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold2690.6 2690.6 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.03 OrthoFinder
SymbC1.scaffold3181.2 3181.2 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.04 OrthoFinder
SymbC1.scaffold3865.4 3865.4 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.03 OrthoFinder
SymbC1.scaffold4014.6 4014.6 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.04 OrthoFinder
SymbC1.scaffold629.10 629.10 ABC-type glycine betaine transport system,... 0.03 OrthoFinder
SymbC1.scaffold663.4 663.4 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.03 OrthoFinder
SymbC1.scaffold6763.4 6763.4 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.05 OrthoFinder
SymbC1.scaffold7936.2 7936.2 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold909.11 909.11 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004451 isocitrate lyase activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0031144 proteasome localization IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011641 Tyr-kin_ephrin_A/B_rcpt-like 483 525
IPR007210 ABC_Gly_betaine_transp_sub-bd 314 406
No external refs found!