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  5. SymbC1.scaffold6587.1

SymbC1.scaffold6587.1 (6587.1)


Aliases : 6587.1

Description : Pumilio RNA-binding repeat [Interproscan].


Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold6587.1
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Sro29_g018990.1 Contig1384.g12742 Pumilio homolog 0.01 OrthoFinder
lcl|BLLF01000415.1_cds_GFH11566.1_6043 HaLaN_07085, GFH11566 Puf protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004340 glucokinase activity IEP Enrichment
MF GO:0004396 hexokinase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0005536 glucose binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0051156 glucose 6-phosphate metabolic process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 318 337
IPR001313 Pumilio_RNA-bd_rpt 283 313
IPR001313 Pumilio_RNA-bd_rpt 409 437
IPR001313 Pumilio_RNA-bd_rpt 240 270
No external refs found!