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  5. SymbC1.scaffold629.10

SymbC1.scaffold629.10 (629.10)


Aliases : 629.10

Description : ABC-type glycine betaine transport system, substrate-binding domain [Interproscan].


Gene families : OG_01_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold629.10
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1125.7 1125.7 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.02 OrthoFinder
SymbC1.scaffold1268.2 1268.2 Tyrosine-protein kinase ephrin type A/B receptor-like;... 0.05 OrthoFinder
SymbC1.scaffold1273.15 1273.15 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.02 OrthoFinder
SymbC1.scaffold1634.2 1634.2 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1693.6 1693.6 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1845.2 1845.2 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.04 OrthoFinder
SymbC1.scaffold197.7 197.7 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.03 OrthoFinder
SymbC1.scaffold2225.3 2225.3 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.02 OrthoFinder
SymbC1.scaffold2615.1 2615.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold2944.2 2944.2 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.02 OrthoFinder
SymbC1.scaffold3376.1 3376.1 ABC-type glycine betaine transport system,... 0.04 OrthoFinder
SymbC1.scaffold6037.1 6037.1 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.03 OrthoFinder
SymbC1.scaffold6763.4 6763.4 Tyrosine-protein kinase ephrin type A/B receptor-like... 0.06 OrthoFinder
SymbC1.scaffold6897.1 6897.1 Tyrosine-protein kinase ephrin type A/B receptor-like;... 0.03 OrthoFinder
SymbC1.scaffold7840.1 7840.1 Tyrosine-protein kinase ephrin type A/B receptor-like;... 0.04 OrthoFinder
SymbC1.scaffold7936.2 7936.2 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold8678.1 8678.1 Tyrosine-protein kinase ephrin type A/B receptor-like;... 0.02 OrthoFinder
SymbC1.scaffold9126.1 9126.1 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
MF GO:0008131 primary amine oxidase activity IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
InterPro domains Description Start Stop
IPR007210 ABC_Gly_betaine_transp_sub-bd 242 345
No external refs found!