SymbC1.scaffold59.5 (59.5)

Aliases : 59.5

Description : DEAD/DEAH box helicase domain; Nucleotide-sugar transporter; Helicase, C-terminal [Interproscan].

Gene families : OG_01_0000110 (OrthoFinder) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold59.5
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g021600	30789366	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre06.g291150	30779565	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana	0.02	OrthoFinder
Sro3572_g349270.1	Contig4413.g33150	RNA helicase DBP2	0.01	OrthoFinder
lcl\|BLLF01000115.1_cds_GFH07782.1_2259	HaLaN_02635, GFH07782	DEAD box RNA helicase	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	Interproscan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEA	Interproscan
BP	GO:0015780	nucleotide-sugar transmembrane transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901264	carbohydrate derivative transport	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004089	carbonate dehydratase activity	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0016829	lyase activity	IEP	Enrichment
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Enrichment
MF	GO:0016836	hydro-lyase activity	IEP	Enrichment
MF	GO:0032977	membrane insertase activity	IEP	Enrichment
MF	GO:0051082	unfolded protein binding	IEP	Enrichment
MF	GO:0071949	FAD binding	IEP	Enrichment
MF	GO:0140104	molecular carrier activity	IEP	Enrichment
MF	GO:0140597	protein carrier activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	67	289
IPR007271	Nuc_sug_transpt	617	914
IPR001650	Helicase_C	328	439

External Links

No external refs found!

SymbC1.scaffold59.5 (59.5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation