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  5. SymbC1.scaffold588.2

SymbC1.scaffold588.2 (588.2)


Aliases : 588.2

Description : ATPase, AAA-type, core; Peptidase M41; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000075 (OrthoFinder) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold588.2
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021179.74 tig00021179_g19288.t1 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic... 0.01 OrthoFinder
Cpa|evm.model.tig00022075.42 tig00022075_g23603.t1 ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.01 OrthoFinder
Cz05g27050.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
Dusal.0121s00013.1 33195080 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.01 OrthoFinder
Dusal.0274s00008.1 33185615 ATPase, AAA-type, core; Peptidase M41 [Interproscan]. 0.02 OrthoFinder
EOD15728 No alias ATP-dependent metalloprotease FtsH [Ensembl]. 0.02 OrthoFinder
OT_10G01670.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
SymbC1.scaffold3414.3 3414.3 ATPase, AAA-type, core; Peptidase M41; AAA ATPase, AAA+... 0.03 OrthoFinder
SymbC1.scaffold5689.1 5689.1 ATPase, AAA-type, core; Peptidase M41; AAA ATPase, AAA+... 0.03 OrthoFinder
SymbC1.scaffold588.3 588.3 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.03 OrthoFinder
XM_003057108.1 MicpuC2_55999, 55999 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
lcl|BLLF01000045.1_cds_GFH06562.1_1039 HaLaN_01213, GFH06562 Membrane AAA-metalloprotease 0.02 OrthoFinder
lcl|BLLF01003298.1_cds_GFH26952.1_21429 HaLaN_25189, GFH26952 AAA domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60287.1_4164 PRW60287 Cell division isoform A 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60288.1_4163 PRW60288 Cell division isoform B 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
BP GO:0016559 peroxisome fission IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0048285 organelle fission IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 462 594
IPR041569 AAA_lid_3 617 660
IPR000642 Peptidase_M41 1 129
IPR000642 Peptidase_M41 676 855
No external refs found!