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  5. SymbC1.scaffold540.7

SymbC1.scaffold540.7 (540.7)


Aliases : 540.7

Description : ABC transporter-like; ABC-transporter extension domain [Interproscan].


Gene families : OG_01_0000347 (OrthoFinder) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold540.7
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cz05g11180.t1 No alias ABC-transporter extension domain; ABC transporter-like... 0.01 OrthoFinder
Cz18g04250.t1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
EOD42114 No alias ABC transporter-like; ABC transporter Uup, C-terminal... 0.01 OrthoFinder
TP03G06030.1 No alias ABC transporter-like; ABC-transporter extension domain... 0.02 OrthoFinder
Transcript_contig_78423 78423 ABC transporter-like [Interproscan]. 0.03 OrthoFinder
Vocar.0013s0253.1 32896303 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
Vocar.0065s0003.1 32886855 ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
XM_002508755.1 MICPUN_106164, 106164 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33209.1_3648 PRW33209 ABC transporter F family member 5 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
BP GO:0019645 anaerobic electron transport chain IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043546 molybdopterin cofactor binding IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR032781 ABC_tran_Xtn 225 298
IPR003439 ABC_transporter-like_ATP-bd 397 434
IPR003439 ABC_transporter-like_ATP-bd 15 186
No external refs found!