SymbC1.scaffold497.8 (497.8)

Aliases : 497.8

Description : Polyadenylate-binding protein/Hyperplastic disc protein; SOS response associated peptidase (SRAP); RNA recognition motif domain [Interproscan].

Gene families : OG_01_0000841 (OrthoFinder) Phylogenetic Tree(s): OG0000841_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold497.8
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g039300	30789032	Protein biosynthesis.translation initiation.mRNA...	0.02	OrthoFinder
Cz06g19170.t1	No alias	Polyadenylate-binding protein/Hyperplastic disc protein;...	0.01	OrthoFinder
PTI_28G01450.1	No alias	RNA recognition motif domain; Polyadenylate-binding...	0.01	OrthoFinder
SymbC1.scaffold5066.1	5066.1	Polyadenylate-binding protein/Hyperplastic disc protein;...	0.02	OrthoFinder
XM_002503535.1	MICPUN_60033, 60033	RNA recognition motif domain; Polyadenylate-binding...	0.02	OrthoFinder
lcl\|BLLF01003252.1_cds_GFH26822.1_21299	HaLaN_25035, GFH26822	Polyadenylate-binding protein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0018142	protein-DNA covalent cross-linking	IEA	Interproscan
BP	GO:0018143	nucleic acid-protein covalent cross-linking	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Enrichment
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
MF	GO:0005216	ion channel activity	IEP	Enrichment
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	Enrichment
BP	GO:0006811	ion transport	IEP	Enrichment
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Enrichment
MF	GO:0015075	ion transmembrane transporter activity	IEP	Enrichment
MF	GO:0015267	channel activity	IEP	Enrichment
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Enrichment
MF	GO:0022803	passive transmembrane transporter activity	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	Enrichment
MF	GO:0047952	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	IEP	Enrichment
BP	GO:0052646	alditol phosphate metabolic process	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Enrichment
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	620	682
IPR000504	RRM_dom	457	513
IPR000504	RRM_dom	532	600
IPR000504	RRM_dom	732	800
IPR003738	SRAP	1	150
IPR002004	PABP_HYD	961	1021

External Links

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SymbC1.scaffold497.8 (497.8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation