SymbC1.scaffold482.6 (482.6)

Aliases : 482.6

Description : RNA polymerase, alpha subunit, C-terminal; Ribosomal protein L17; DNA-directed RNA polymerase, RpoA/D/Rpb3-type; DNA-directed RNA polymerase, insert domain [Interproscan].

Gene families : OG_01_0005985 (OrthoFinder) Phylogenetic Tree(s): OG0005985_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold482.6
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
CzCPg01095.t1 No alias DNA-directed RNA polymerase, insert domain; DNA-directed... 0.01 OrthoFinder
SymbC1.scaffold1.2029 1.2029 Ribosomal protein L17 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_65618 65618 DNA-directed RNA polymerase, RpoA/D/Rpb3-type [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011260 RNAP_asu_C 257 316
IPR011262 DNA-dir_RNA_pol_insert 66 156
IPR000456 Ribosomal_L17 344 499
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 31 226
No external refs found!