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  5. SymbC1.scaffold4455.2

SymbC1.scaffold4455.2 (4455.2)


Aliases : 4455.2

Description : Ion transport domain [Interproscan].


Gene families : OG_01_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4455.2
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021244.33 tig00021244_g19588.t1 Putative cyclic nucleotide-gated ion channel 9... 0.01 OrthoFinder
SymbC1.scaffold1467.2 1467.2 Cyclic nucleotide-binding domain [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1695.3 1695.3 Potassium channel domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold3638.5 3638.5 Potassium channel domain; Cyclic nucleotide-binding... 0.04 OrthoFinder
SymbC1.scaffold718.5 718.5 Ion transport domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004336 galactosylceramidase activity IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006665 sphingolipid metabolic process IEP Enrichment
BP GO:0006672 ceramide metabolic process IEP Enrichment
BP GO:0006677 glycosylceramide metabolic process IEP Enrichment
BP GO:0006681 galactosylceramide metabolic process IEP Enrichment
BP GO:0006683 galactosylceramide catabolic process IEP Enrichment
BP GO:0006687 glycosphingolipid metabolic process IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0019374 galactolipid metabolic process IEP Enrichment
BP GO:0019376 galactolipid catabolic process IEP Enrichment
BP GO:0019377 glycolipid catabolic process IEP Enrichment
BP GO:0030149 sphingolipid catabolic process IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0046466 membrane lipid catabolic process IEP Enrichment
BP GO:0046477 glycosylceramide catabolic process IEP Enrichment
BP GO:0046479 glycosphingolipid catabolic process IEP Enrichment
BP GO:0046514 ceramide catabolic process IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 26 141
IPR005821 Ion_trans_dom 194 291
No external refs found!