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  5. SymbC1.scaffold4346.1

SymbC1.scaffold4346.1 (4346.1)


Aliases : 4346.1

Description : Rab-GTPase-TBC domain; Aminotransferase class-III [Interproscan].


Gene families : OG_01_0011672 (OrthoFinder) Phylogenetic Tree(s): OG0011672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4346.1
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
TP07G02020.1 No alias Hypothetical protein 0.01 OrthoFinder
XM_002508122.1 MICPUN_60617, 60617 Aminotransferase class-III [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008483 transaminase activity IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005814 Aminotrans_3 623 821
IPR005814 Aminotrans_3 444 555
IPR000195 Rab-GTPase-TBC_dom 160 370
No external refs found!