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  5. Cpa|evm.model.tig00020592.9

Cpa|evm.model.tig00020592.9 (tig00020592_g11639.t1)


Aliases : tig00020592_g11639.t1

No description available


Gene families : OG_01_0001258 (OrthoFinder) Phylogenetic Tree(s): OG0001258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020592.9
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
PTI_18G01950.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.04 OrthoFinder
Sro135_g063850.1 Contig2231.g18530 Probable 28S rRNA (cytosine-C(5))-methyltransferase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 224 337
No external refs found!