SymbC1.scaffold4319.2 (4319.2)

Aliases : 4319.2

Description : N-acetylmuramoyl-L-alanine amidase domain; RNA recognition motif domain [Interproscan].

Gene families : OG_01_0004639 (OrthoFinder) Phylogenetic Tree(s): OG0004639_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold4319.2
Cluster	HCCA: Cluster_15

Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006027	glycosaminoglycan catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008745	N-acetylmuramoyl-L-alanine amidase activity	IEA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009253	peptidoglycan catabolic process	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	None	Extended
BP	GO:0030203	glycosaminoglycan metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0061783	peptidoglycan muralytic activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0009966	regulation of signal transduction	IEP	Enrichment
BP	GO:0010646	regulation of cell communication	IEP	Enrichment
BP	GO:0023051	regulation of signaling	IEP	Enrichment
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002502	Amidase_domain	380	498
IPR000504	RRM_dom	852	917

External Links

No external refs found!

SymbC1.scaffold4319.2 (4319.2)

Expression Profile

Co-expression Networks

Functional Annotation