SymbC1.scaffold4319.1 (4319.1)

Aliases : 4319.1

Description : DEAD/DEAH box helicase domain; Domain of unknown function DUF1605; Helicase-associated domain; Helicase, C-terminal [Interproscan].

Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold4319.1
Cluster	HCCA: Cluster_169

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021589.28	tig00021589_g22735.t1	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder
Dusal.0244s00011.1	33186504	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.01	OrthoFinder
EOD05883	No alias	ATP-dependent RNA helicase [Ensembl].	0.02	OrthoFinder
EOD26794	No alias	Helicase, C-terminal; Domain of unknown function...	0.01	OrthoFinder
EOD37846	No alias	ATP-dependent RNA helicase [Ensembl].	0.01	OrthoFinder
OT_01G03120.1	No alias	Helicase-associated domain; Helicase, C-terminal; Domain...	0.01	OrthoFinder
Sro1676_g290440.1	Contig3487.g27033	Splicing factor ATP-dependent RNA helicase	0.01	OrthoFinder
TP20G00330.1	No alias	Helicase-associated domain [Interproscan].	0.03	OrthoFinder
Transcript_contig_55707	55707	Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase...	0.01	OrthoFinder
lcl\|BLLF01005212.1_cds_GFH30884.1_25361	HaLaN_29814, GFH30884	RNA helicase	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATPase, acting on DNA	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005216	ion channel activity	IEP	Enrichment
MF	GO:0005509	calcium ion binding	IEP	Enrichment
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Enrichment
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	Enrichment
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0009966	regulation of signal transduction	IEP	Enrichment
BP	GO:0010646	regulation of cell communication	IEP	Enrichment
MF	GO:0015267	channel activity	IEP	Enrichment
MF	GO:0022803	passive transmembrane transporter activity	IEP	Enrichment
BP	GO:0023051	regulation of signaling	IEP	Enrichment
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Enrichment
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Enrichment
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	769	900
IPR007502	Helicase-assoc_dom	962	1050
IPR011545	DEAD/DEAH_box_helicase_dom	576	727
IPR011709	DUF1605	1118	1178

External Links

No external refs found!