SymbC1.scaffold4.76 (4.76)


Aliases : 4.76

Description : Cucumovirus coat protein, chain A; GNAT domain; TatD family; Peptidase S9, prolyl oligopeptidase, catalytic domain; UspA; Lytic transglycosylase, superhelical linker; Transglycosylase SLT domain 1 [Interproscan].


Gene families : OG_01_0001961 (OrthoFinder) Phylogenetic Tree(s): OG0001961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.76
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Vocar.0009s0124.1 32893363 WD40-like Beta Propeller; Peptidase S9, prolyl... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008080 N-acetyltransferase activity IEA Interproscan
MF GO:0008236 serine-type peptidase activity IEA Interproscan
MF GO:0016788 hydrolase activity, acting on ester bonds IEA Interproscan
CC GO:0042597 periplasmic space IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
BP GO:0006109 regulation of carbohydrate metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0030154 cell differentiation IEP Enrichment
BP GO:0030435 sporulation resulting in formation of a cellular spore IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0043934 sporulation IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Enrichment
BP GO:0048869 cellular developmental process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012289 Lytic_TGlycosylase_superhlx_L 568 633
IPR023800 Cucumovirus_coat_A 314 379
IPR008258 Transglycosylase_SLT_dom_1 653 754
IPR000182 GNAT_dom 1589 1716
IPR000182 GNAT_dom 795 934
IPR006016 UspA 7 145
IPR001375 Peptidase_S9 2139 2342
IPR001130 TatD_family 971 1218
No external refs found!