SymbC1.scaffold4.707 (4.707)

Aliases : 4.707

Description : Mur ligase, N-terminal catalytic domain; MraZ domain; Penicillin-binding protein, transpeptidase; Ribosomal RNA small subunit methyltransferase H; Mur ligase, central; Penicillin-binding protein, dimerisation domain; Mur ligase, C-terminal; Glycosyl transferase, family 4; Cell division protein FtsQ/DivIB; Cell division protein FtsL; Probable peptidoglycan glycosyltransferase FtsW/RodA; POTRA domain, FtsQ-type [Interproscan].

Gene families : OG_01_0005062 (OrthoFinder) Phylogenetic Tree(s): OG0005062_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold4.707
Cluster	HCCA: Cluster_106

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
MF	GO:0008658	penicillin binding	IEA	Interproscan
MF	GO:0008963	phospho-N-acetylmuramoyl-pentapeptide-transferase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	None	Extended
MF	GO:0016874	ligase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0031406	carboxylic acid binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0033218	amide binding	None	Extended
MF	GO:0033293	monocarboxylic acid binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043177	organic acid binding	None	Extended
BP	GO:0051301	cell division	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1901681	sulfur compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0003729	mRNA binding	IEP	Enrichment
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Enrichment
MF	GO:0003954	NADH dehydrogenase activity	IEP	Enrichment
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Enrichment
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Enrichment
MF	GO:0004177	aminopeptidase activity	IEP	Enrichment
MF	GO:0004375	glycine dehydrogenase (decarboxylating) activity	IEP	Enrichment
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Enrichment
MF	GO:0004594	pantothenate kinase activity	IEP	Enrichment
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	Enrichment
MF	GO:0005244	voltage-gated ion channel activity	IEP	Enrichment
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Enrichment
MF	GO:0005253	anion channel activity	IEP	Enrichment
MF	GO:0005254	chloride channel activity	IEP	Enrichment
MF	GO:0005507	copper ion binding	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0006401	RNA catabolic process	IEP	Enrichment
BP	GO:0006402	mRNA catabolic process	IEP	Enrichment
BP	GO:0006544	glycine metabolic process	IEP	Enrichment
BP	GO:0006546	glycine catabolic process	IEP	Enrichment
BP	GO:0006629	lipid metabolic process	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006805	xenobiotic metabolic process	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0006821	chloride transport	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Enrichment
MF	GO:0008308	voltage-gated anion channel activity	IEP	Enrichment
BP	GO:0008616	queuosine biosynthetic process	IEP	Enrichment
BP	GO:0008653	lipopolysaccharide metabolic process	IEP	Enrichment
MF	GO:0009055	electron transfer activity	IEP	Enrichment
BP	GO:0009056	catabolic process	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0009063	cellular amino acid catabolic process	IEP	Enrichment
BP	GO:0009071	serine family amino acid catabolic process	IEP	Enrichment
BP	GO:0009103	lipopolysaccharide biosynthetic process	IEP	Enrichment
BP	GO:0009119	ribonucleoside metabolic process	IEP	Enrichment
BP	GO:0009163	nucleoside biosynthetic process	IEP	Enrichment
BP	GO:0009889	regulation of biosynthetic process	IEP	Enrichment
BP	GO:0010124	phenylacetate catabolic process	IEP	Enrichment
BP	GO:0010468	regulation of gene expression	IEP	Enrichment
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010629	negative regulation of gene expression	IEP	Enrichment
BP	GO:0010639	negative regulation of organelle organization	IEP	Enrichment
BP	GO:0016054	organic acid catabolic process	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Enrichment
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Enrichment
MF	GO:0016642	oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	IEP	Enrichment
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Enrichment
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Enrichment
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Enrichment
MF	GO:0016856	racemase and epimerase activity, acting on hydroxy acids and derivatives	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0016987	sigma factor activity	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0019222	regulation of metabolic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
BP	GO:0019439	aromatic compound catabolic process	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
MF	GO:0022832	voltage-gated channel activity	IEP	Enrichment
BP	GO:0022900	electron transport chain	IEP	Enrichment
MF	GO:0030551	cyclic nucleotide binding	IEP	Enrichment
BP	GO:0031323	regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Enrichment
BP	GO:0031344	regulation of cell projection organization	IEP	Enrichment
BP	GO:0031345	negative regulation of cell projection organization	IEP	Enrichment
MF	GO:0031419	cobalamin binding	IEP	Enrichment
BP	GO:0031554	regulation of DNA-templated transcription, termination	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0035438	cyclic-di-GMP binding	IEP	Enrichment
BP	GO:0042178	xenobiotic catabolic process	IEP	Enrichment
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Enrichment
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0044248	cellular catabolic process	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0044255	cellular lipid metabolic process	IEP	Enrichment
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Enrichment
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
BP	GO:0044282	small molecule catabolic process	IEP	Enrichment
BP	GO:0044781	bacterial-type flagellum organization	IEP	Enrichment
BP	GO:0046116	queuosine metabolic process	IEP	Enrichment
BP	GO:0046395	carboxylic acid catabolic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
MF	GO:0046906	tetrapyrrole binding	IEP	Enrichment
MF	GO:0048027	mRNA 5'-UTR binding	IEP	Enrichment
BP	GO:0048523	negative regulation of cellular process	IEP	Enrichment
MF	GO:0050043	lactate racemase activity	IEP	Enrichment
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Enrichment
BP	GO:0050789	regulation of biological process	IEP	Enrichment
BP	GO:0050794	regulation of cellular process	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051129	negative regulation of cellular component organization	IEP	Enrichment
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051252	regulation of RNA metabolic process	IEP	Enrichment
MF	GO:0051536	iron-sulfur cluster binding	IEP	Enrichment
MF	GO:0051540	metal cluster binding	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0060491	regulation of cell projection assembly	IEP	Enrichment
BP	GO:0065007	biological regulation	IEP	Enrichment
MF	GO:0070567	cytidylyltransferase activity	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Enrichment
BP	GO:0080090	regulation of primary metabolic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
BP	GO:1901575	organic substance catabolic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Enrichment
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Enrichment
BP	GO:1902115	regulation of organelle assembly	IEP	Enrichment
BP	GO:1902116	negative regulation of organelle assembly	IEP	Enrichment
BP	GO:1902208	regulation of bacterial-type flagellum assembly	IEP	Enrichment
BP	GO:1902209	negative regulation of bacterial-type flagellum assembly	IEP	Enrichment
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Enrichment
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR004101	Mur_ligase_C	1353	1437
IPR004101	Mur_ligase_C	2141	2217
IPR004101	Mur_ligase_C	2925	3013
IPR001182	FtsW/RodA	2273	2602
IPR013221	Mur_ligase_cen	1132	1332
IPR013221	Mur_ligase_cen	2723	2903
IPR013221	Mur_ligase_cen	1949	2120
IPR000713	Mur_ligase_N	1048	1105
IPR000713	Mur_ligase_N	2620	2718
IPR005548	Cell_div_FtsQ/DivIB	3154	3268
IPR020603	MraZ_dom	1	75
IPR020603	MraZ_dom	78	127
IPR005311	PBP_dimer	532	681
IPR001460	PCN-bd_Tpept	721	1014
IPR013685	POTRA_FtsQ_type	3082	3148
IPR000715	Glycosyl_transferase_4	1599	1784
IPR002903	RsmH	158	453
IPR011922	Cell_div_FtsL	452	515

External Links

No external refs found!

SymbC1.scaffold4.707 (4.707)

Expression Profile

Co-expression Networks

Functional Annotation