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  5. SymbC1.scaffold4.577

SymbC1.scaffold4.577 (4.577)


Aliases : 4.577

Description : Neurotransmitter-gated ion-channel transmembrane domain; Luciferase-like domain; Neurotransmitter-gated ion-channel ligand-binding domain; Domain of unknown function DUF2061, membrane; Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant [Interproscan].


Gene families : OG_01_0001120 (OrthoFinder) Phylogenetic Tree(s): OG0001120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.577
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
PTI_14G00540.1 No alias Alkyl hydroperoxide reductase subunit C/ Thiol specific... 0.01 OrthoFinder
TP03G00500.1 No alias Alkyl hydroperoxide reductase subunit C/ Thiol specific... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005230 extracellular ligand-gated ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016209 antioxidant activity IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030154 cell differentiation IEP Enrichment
BP GO:0030435 sporulation resulting in formation of a cellular spore IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043934 sporulation IEP Enrichment
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Enrichment
BP GO:0048869 cellular developmental process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000866 AhpC/TSA 5 131
IPR006202 Neur_chan_lig-bd 658 856
IPR011251 Luciferase-like_dom 216 534
IPR018638 DUF2061_membrane 155 200
IPR006029 Neurotrans-gated_channel_TM 865 940
No external refs found!