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  5. SymbC1.scaffold4.534

SymbC1.scaffold4.534 (4.534)


Aliases : 4.534

Description : MaoC-like dehydratase domain; Sodium/solute symporter; Carboxymuconolactone decarboxylase-like [Interproscan].


Gene families : OG_01_0001496 (OrthoFinder) Phylogenetic Tree(s): OG0001496_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.534
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold17203.1 17203.1 Protein of unknown function DUF1501 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold2.1119 2.1119 Protein of unknown function DUF1501 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold2.1972 2.1972 Protein of unknown function DUF1501;... 0.04 OrthoFinder
SymbC1.scaffold2.823 2.823 HEAT repeats; Protein of unknown function DUF1501; RNA... 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
MF GO:0051920 peroxiredoxin activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009292 genetic transfer IEP Enrichment
BP GO:0009294 DNA mediated transformation IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003779 CMD-like 703 773
IPR001734 Na/solute_symporter 1 251
IPR001734 Na/solute_symporter 308 459
IPR002539 MaoC-like_dom 531 629
No external refs found!