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  5. SymbC1.scaffold4.1039

SymbC1.scaffold4.1039 (4.1039)


Aliases : 4.1039

Description : 5-formyltetrahydrofolate cyclo-ligase; Protein of unknown function DUF2878; Amidase signature domain; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Histidine kinase/HSP90-like ATPase; Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase [Interproscan].


Gene families : OG_01_0000341 (OrthoFinder) Phylogenetic Tree(s): OG0000341_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.1039
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001221.6 tig00001221_g7592.t1 Glutamyl-tRNA(Gln) amidotransferase subunit A,... 0.02 OrthoFinder
Sro835_g208790.1 Contig3133.g24861 Glutamyl-tRNA(Gln) amidotransferase subunit A 0.02 OrthoFinder
Transcript_contig_59004 59004 Amidase signature domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
BP GO:0030030 cell projection organization IEP Enrichment
BP GO:0030638 polyketide metabolic process IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0031344 regulation of cell projection organization IEP Enrichment
BP GO:0031345 negative regulation of cell projection organization IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0044781 bacterial-type flagellum organization IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
MF GO:0048027 mRNA 5'-UTR binding IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0060491 regulation of cell projection assembly IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
BP GO:1902115 regulation of organelle assembly IEP Enrichment
BP GO:1902116 negative regulation of organelle assembly IEP Enrichment
BP GO:1902208 regulation of bacterial-type flagellum assembly IEP Enrichment
BP GO:1902209 negative regulation of bacterial-type flagellum assembly IEP Enrichment
InterPro domains Description Start Stop
IPR002698 FTHF_cligase 11 195
IPR023631 Amidase_dom 724 1161
IPR003661 HisK_dim/P 1571 1631
IPR021306 DUF2878 1188 1335
IPR002591 Phosphodiest/P_Trfase 320 643
IPR003594 HATPase_C 1684 1776
No external refs found!