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  5. SymbC1.scaffold39.73

SymbC1.scaffold39.73 (39.73)


Aliases : 39.73

Description : Histidine kinase CheA-like, homodimeric domain; Histidine kinase/HSP90-like ATPase; Signal transduction response regulator, receiver domain; CheW-like domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain [Interproscan].


Gene families : OG_01_0001853 (OrthoFinder) Phylogenetic Tree(s): OG0001853_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold39.73
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold73.23 73.23 Methyl-accepting chemotaxis protein (MCP) signalling... 0.01 OrthoFinder
SymbC1.scaffold73.82 73.82 Succinyl-CoA synthetase-like, flavodoxin domain;... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0004673 protein histidine kinase activity IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006935 chemotaxis IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009094 L-phenylalanine biosynthetic process IEP Enrichment
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004105 CheA-like_dim 215 274
IPR008207 Sig_transdc_His_kin_Hpt_dom 8 79
IPR001789 Sig_transdc_resp-reg_receiver 792 882
IPR001789 Sig_transdc_resp-reg_receiver 1037 1145
IPR003594 HATPase_C 331 470
IPR002545 CheW-lke_dom 905 1047
IPR002545 CheW-lke_dom 476 618
No external refs found!