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  5. Cpa|evm.model.tig00000042.11

Cpa|evm.model.tig00000042.11 (tig00000042_g15397.t1)


Aliases : tig00000042_g15397.t1

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain


Gene families : OG_01_0002678 (OrthoFinder) Phylogenetic Tree(s): OG0002678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000042.11
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cz07g27260.t1 No alias Clathrin, heavy chain, propeller repeat; Clathrin, heavy... 0.04 OrthoFinder
Dusal.0114s00011.1 33202239 Clathrin-H-link; Clathrin, heavy chain, linker, core... 0.03 OrthoFinder
EOD40774 No alias Clathrin heavy chain [Ensembl]. 0.02 OrthoFinder
OT_01G01810.1 No alias Clathrin, heavy chain/VPS, 7-fold repeat;... 0.02 OrthoFinder
Sro1407_g270000.1 Contig1773.g15693 Clathrin heavy chain 1 0.06 OrthoFinder
SymbC1.scaffold8895.2 8895.2 Clathrin, heavy chain/VPS, 7-fold repeat [Interproscan]. 0.02 OrthoFinder
TP10G03700.1 No alias Clathrin-H-link; Clathrin, heavy chain, linker, core... 0.03 OrthoFinder
Vocar.0036s0110.1 32892264 Clathrin-H-link; Clathrin, heavy chain/VPS, 7-fold... 0.05 OrthoFinder
lcl|BLLF01003272.1_cds_GFH26883.1_21360 HaLaN_25106, GFH26883 Clathrin heavy chain 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61204.1_268 PRW61204 Clathrin heavy chain 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499470.1_8423 KAA8499470 Clathrin heavy chain 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008184 glycogen phosphorylase activity IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 668 806
IPR000547 Clathrin_H-chain/VPS_repeat 1113 1250
IPR000547 Clathrin_H-chain/VPS_repeat 959 1100
IPR000547 Clathrin_H-chain/VPS_repeat 1407 1548
IPR000547 Clathrin_H-chain/VPS_repeat 531 631
IPR000547 Clathrin_H-chain/VPS_repeat 1260 1399
IPR000547 Clathrin_H-chain/VPS_repeat 815 940
IPR022365 Clathrin_H-chain_propeller_rpt 307 336
IPR022365 Clathrin_H-chain_propeller_rpt 151 191
No external refs found!