SymbC1.scaffold3653.4 (3653.4)

Aliases : 3653.4

Description : ABC transporter-like; ABC transporter type 1, transmembrane domain [Interproscan].

Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold3653.4
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000169.4	tig00000169_g11876.t1	No description available	0.02	OrthoFinder
Cz11g18090.t1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
EOD31963	No alias	Putative ABC transporter [Ensembl].	0.01	OrthoFinder
EOD33358	No alias	Putative ABC transporter [Ensembl].	0.02	OrthoFinder
TP12G00540.1	No alias	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
Transcript_contig_54411	54411	ABC transporter type 1, transmembrane domain; ABC...	0.01	OrthoFinder
Vocar.0023s0168.1	32883330	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
XM_002508988.1	MICPUN_98162, 98162	ATP-binding cassette superfamily	0.02	OrthoFinder
XM_003057414.1	MicpuC2_15544, 15544	ATP-binding cassette superfamily	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004602	glutathione peroxidase activity	IEP	Enrichment
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Enrichment
CC	GO:0005875	microtubule associated complex	IEP	Enrichment
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
BP	GO:0006979	response to oxidative stress	IEP	Enrichment
CC	GO:0030286	dynein complex	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	245	371
IPR011527	ABC1_TM_dom	25	170

External Links

No external refs found!

SymbC1.scaffold3653.4 (3653.4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation