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  5. SymbC1.scaffold3405.1

SymbC1.scaffold3405.1 (3405.1)


Aliases : 3405.1

Description : Ankyrin repeat-containing domain; DnaJ domain [Interproscan].


Gene families : OG_01_0000003 (OrthoFinder) Phylogenetic Tree(s): OG0000003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3405.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000525.11 tig00000525_g1954.t1 DnaJ protein ERDJ3B OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
XM_002505895.1 MICPUN_109466, 109466 DnaJ domain [Interproscan]. 0.03 OrthoFinder
XM_002509043.1 MICPUN_86934, 86934 DnaJ domain; Chaperone DnaJ, C-terminal [Interproscan]. 0.01 OrthoFinder
XM_003057165.1 MicpuC2_32190, 32190 DnaJ domain [Interproscan]. 0.02 OrthoFinder
XM_003060374.1 MicpuC2_6491, 6491 DnaJ domain [Interproscan]. 0.01 OrthoFinder
XM_003061633.1 MicpuC2_28590, 28590 DnaJ domain; Chaperone DnaJ, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59130.1_7164 PRW59130 DnaJ-like protein subfamily B member 5-like 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57486.1_9246 PRW57486 Chaperone dnaJ 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 130 217
IPR001623 DnaJ_domain 606 659
No external refs found!