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  5. Cpa|evm.model.tig00000123.23

Cpa|evm.model.tig00000123.23 (tig00000123_g6930.t1)


Aliases : tig00000123_g6930.t1

No description available


Gene families : OG_01_0004178 (OrthoFinder) Phylogenetic Tree(s): OG0004178_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000123.23
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre12.g538500 30792430 No description available 0.17 OrthoFinder
Dusal.0093s00009.1 33185317 Small-subunit processome, Utp12 [Interproscan]. 0.03 OrthoFinder
EOD28390 No alias WD40 repeat [Interproscan]. 0.09 OrthoFinder
OT_08G03100.1 No alias Small-subunit processome, Utp12 [Interproscan]. 0.06 OrthoFinder
OT_14G01500.1 No alias WD40 repeat [Interproscan]. 0.01 OrthoFinder
PTI_14G00080.1 No alias Small-subunit processome, Utp12 [Interproscan]. 0.14 OrthoFinder
Sro2322_g323270.1 Contig3734.g28639 WD repeat domain 43 0.08 OrthoFinder
TP09G00160.1 No alias Hypothetical protein 0.09 OrthoFinder
Vocar.0034s0018.1 32893029 Small-subunit processome, Utp12 [Interproscan]. 0.05 OrthoFinder
XM_002508197.1 MICPUN_60767, 60767 Small-subunit processome, Utp12 [Interproscan]. 0.1 OrthoFinder
XM_003058886.1 MicpuC2_58229, 58229 Small-subunit processome, Utp12 [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492841.1_2577 KAA8492841 WD repeat-containing protein 43 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 464 566
IPR001680 WD40_repeat 111 142
IPR001680 WD40_repeat 182 210
No external refs found!