SymbC1.scaffold32.119 (32.119)

Aliases : 32.119

Description : General secretion pathway protein K; Type II secretion system protein GspG, C-terminal; Type II secretion system protein GspE, N-terminal; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Histidine kinase/HSP90-like ATPase; Signal transduction response regulator, receiver domain; Type II/IV secretion system protein; Type II secretion system protein GspF domain [Interproscan].

Gene families : OG_01_0000353 (OrthoFinder) Phylogenetic Tree(s): OG0000353_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold32.119
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1726 1.1726 General secretion pathway protein K [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold2.422 2.422 Pterin 4 alpha carbinolamine dehydratase; Type II... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
BP GO:0009306 protein secretion IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 3513 3579
IPR003594 HATPase_C 3626 3737
IPR013545 T2SS_protein-GspG_C 1255 1336
IPR018076 T2SS_GspF_dom 876 999
IPR018076 T2SS_GspF_dom 1082 1191
IPR007831 T2SS_GspE_N 269 368
IPR001789 Sig_transdc_resp-reg_receiver 3351 3460
IPR001789 Sig_transdc_resp-reg_receiver 3854 3963
IPR001789 Sig_transdc_resp-reg_receiver 3236 3347
IPR001482 T2SS/T4SS 415 683
IPR005628 GspK 1927 2104
No external refs found!