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  5. SymbC1.scaffold2852.1

SymbC1.scaffold2852.1 (2852.1)


Aliases : 2852.1

Description : Cyclic nucleotide-binding domain; Ion transport domain [Interproscan].


Gene families : OG_01_0000305 (OrthoFinder) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2852.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10192.1 10192.1 EF-hand domain [Interproscan]. 0.08 OrthoFinder
SymbC1.scaffold1537.1 1537.1 Ion transport domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1821.3 1821.3 EF-hand domain; Ion transport domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold2758.5 2758.5 Ion transport domain [Interproscan]. 0.1 OrthoFinder
SymbC1.scaffold4039.1 4039.1 EF-hand domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold702.8 702.8 Ion transport domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
BP GO:0006144 purine nucleobase metabolic process IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009113 purine nucleobase biosynthetic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 397 478
IPR005821 Ion_trans_dom 2 160
No external refs found!