1. Home
  2. Species
  3. Cladocopium sp. clade C
  4. Sequence
  5. SymbC1.scaffold2821.3

SymbC1.scaffold2821.3 (2821.3)


Aliases : 2821.3

Description : Chlorophyll A-B binding protein; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000059 (OrthoFinder) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2821.3
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Sro851_g210830.1 Contig461.g6209 Chloroplastic 0.02 OrthoFinder
SymbC1.scaffold1535.2 1535.2 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold2826.3 2826.3 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 81 108
IPR022796 Chloroa_b-bind 1263 1348
IPR022796 Chloroa_b-bind 721 891
IPR022796 Chloroa_b-bind 451 597
IPR022796 Chloroa_b-bind 319 408
IPR022796 Chloroa_b-bind 1074 1228
IPR022796 Chloroa_b-bind 913 1071
IPR022796 Chloroa_b-bind 27 64
IPR000504 RRM_dom 1480 1549
IPR000504 RRM_dom 1568 1635
No external refs found!