SymbC1.scaffold25.189 (25.189)


Aliases : 25.189

Description : Bacterial extracellular solute-binding protein; ABC transporter type 1, transmembrane domain MetI-like; DapA-like; Dihydroxy-acid/6-phosphogluconate dehydratase [Interproscan].


Gene families : OG_01_0000256 (OrthoFinder) Phylogenetic Tree(s): OG0000256_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold25.189
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold109.102 109.102 ABC transporter-like; ABC transporter type 1,... 0.04 OrthoFinder
SymbC1.scaffold109.3 109.3 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
SymbC1.scaffold109.44 109.44 Bacterial extracellular solute-binding protein [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold109.47 109.47 Bacterial extracellular solute-binding protein [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold14655.2 14655.2 ABC transporter-like; Phospholipid/glycerol... 0.06 OrthoFinder
SymbC1.scaffold2.1209 2.1209 Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl... 0.02 OrthoFinder
SymbC1.scaffold25.145 25.145 Bacterial extracellular solute-binding protein; ABC... 0.05 OrthoFinder
SymbC1.scaffold70.72 70.72 Bacterial extracellular solute-binding protein; ABC... 0.03 OrthoFinder
SymbC1.scaffold73.50 73.50 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
Vocar.0002s0343.1 32891178 ABC transporter-like; Transport-associated OB, type 2... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016829 lyase activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
MF GO:0004040 amidase activity IEP Enrichment
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006144 purine nucleobase metabolic process IEP Enrichment
BP GO:0006353 DNA-templated transcription, termination IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
BP GO:0008614 pyridoxine metabolic process IEP Enrichment
BP GO:0008615 pyridoxine biosynthetic process IEP Enrichment
MF GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009113 purine nucleobase biosynthetic process IEP Enrichment
CC GO:0009349 riboflavin synthase complex IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0033856 pyridoxine 5'-phosphate synthase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002220 DapA-like 1582 1850
IPR000581 DiOHA_6PGluconate_deHydtase 1051 1565
IPR006059 SBP 80 368
IPR000515 MetI-like 850 975
IPR000515 MetI-like 566 754
No external refs found!