1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00020554.15

Cpa|evm.model.tig00020554.15 (tig00020554_g10801.t1)


Aliases : tig00020554_g10801.t1

No description available


Gene families : OG_01_0002818 (OrthoFinder) Phylogenetic Tree(s): OG0002818_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020554.15
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Sro194_g083050.1 Contig237.g2900 Splicing factor 18 0.01 OrthoFinder
Transcript_contig_58175 58175 Pre-mRNA processing factor 4 (PRP4)-like; Prp18 [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1632.1 32884946 Prp18; Pre-mRNA processing factor 4 (PRP4)-like [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45581.1_1272 PRW45581 Pre-mRNA-splicing factor 18-like isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005681 spliceosomal complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019902 phosphatase binding IEP Enrichment
MF GO:0019903 protein phosphatase binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
InterPro domains Description Start Stop
IPR004098 Prp18 217 357
IPR014906 PRP4-like 111 137
No external refs found!