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  5. SymbC1.scaffold2431.4

SymbC1.scaffold2431.4 (2431.4)


Aliases : 2431.4

Description : Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; CobW/HypB/UreG, nucleotide-binding domain [Interproscan].


Gene families : OG_01_0000111 (OrthoFinder) Phylogenetic Tree(s): OG0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2431.4
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
OT_13G01460.1 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.05 OrthoFinder
SymbC1.scaffold1504.3 1504.3 CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold9146.1 9146.1 Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.03 OrthoFinder
Vocar.0042s0114.1 32892065 WW domain; CobW/HypB/UreG, nucleotide-binding domain;... 0.02 OrthoFinder
lcl|BLLF01000319.1_cds_GFH10484.1_4961 HaLaN_05805, GFH10484 CobW C-terminal domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000344.1_cds_GFH10756.1_5233 HaLaN_06127, GFH10756 CobW C-terminal domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 287 371
IPR003495 CobW/HypB/UreG_dom 53 242
No external refs found!