SymbC1.scaffold238.8 (238.8)

Aliases : 238.8

Description : Poly(ADP-ribose) polymerase, catalytic domain; TauD/TfdA-like domain; Methyltransferase domain; Pseudouridine synthase, RsuA/RluA [Interproscan].

Gene families : OG_01_0002003 (OrthoFinder) Phylogenetic Tree(s): OG0002003_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold238.8
Cluster	HCCA: Cluster_87

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016763	pentosyltransferase activity	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Enrichment
MF	GO:0004620	phospholipase activity	IEP	Enrichment
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Enrichment
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Enrichment
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Enrichment
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	Enrichment
BP	GO:0009395	phospholipid catabolic process	IEP	Enrichment
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Enrichment
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Enrichment
BP	GO:0016042	lipid catabolic process	IEP	Enrichment
MF	GO:0016160	amylase activity	IEP	Enrichment
MF	GO:0016161	beta-amylase activity	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
CC	GO:0031090	organelle membrane	IEP	Enrichment
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Enrichment
BP	GO:0044242	cellular lipid catabolic process	IEP	Enrichment
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Enrichment
CC	GO:0098588	bounding membrane of organelle	IEP	Enrichment
BP	GO:1901264	carbohydrate derivative transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	1661	1809
IPR003819	TauD/TfdA-like	1195	1426
IPR012317	Poly(ADP-ribose)pol_cat_dom	922	1125
IPR012317	Poly(ADP-ribose)pol_cat_dom	725	864

External Links

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SymbC1.scaffold238.8 (238.8)

Expression Profile

Co-expression Networks

Functional Annotation