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  5. SymbC1.scaffold2236.1

SymbC1.scaffold2236.1 (2236.1)


Aliases : 2236.1

Description : C-5 cytosine methyltransferase; Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000169 (OrthoFinder) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2236.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold110.2 110.2 Ribonuclease H domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1613.2 1613.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.08 OrthoFinder
SymbC1.scaffold262.5 262.5 Ribonuclease H domain; Reverse transcriptase domain... 0.04 OrthoFinder
SymbC1.scaffold4890.1 4890.1 Reverse transcriptase domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold5005.1 5005.1 Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold68.7 68.7 Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold7591.2 7591.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.04 OrthoFinder
SymbC1.scaffold8643.1 8643.1 C-5 cytosine methyltransferase; Reverse transcriptase... 0.03 OrthoFinder
SymbC1.scaffold874.6 874.6 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold8956.2 8956.2 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0003796 lysozyme activity IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0016998 cell wall macromolecule catabolic process IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0044036 cell wall macromolecule metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 2158 2364
IPR001525 C5_MeTfrase 104 397
No external refs found!