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  5. SymbC1.scaffold22.97

SymbC1.scaffold22.97 (22.97)


Aliases : 22.97

Description : Transport-associated OB, type 2; ABC transporter-like; Bacterial extracellular solute-binding protein [Interproscan].


Gene families : OG_01_0000256 (OrthoFinder) Phylogenetic Tree(s): OG0000256_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold22.97
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold109.102 109.102 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
SymbC1.scaffold109.3 109.3 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
SymbC1.scaffold109.44 109.44 Bacterial extracellular solute-binding protein [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold160.52 160.52 Cupin 2, conserved barrel; ABC transporter-like;... 0.03 OrthoFinder
SymbC1.scaffold540.45 540.45 Glycoside hydrolase, family 4; ABC transporter type 1,... 0.03 OrthoFinder
SymbC1.scaffold73.50 73.50 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Transcript_contig_60044 60044 ABC transporter-like [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0006805 xenobiotic metabolic process IEP Enrichment
BP GO:0006808 regulation of nitrogen utilization IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0010124 phenylacetate catabolic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0042178 xenobiotic catabolic process IEP Enrichment
BP GO:0042537 benzene-containing compound metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013611 Transp-assoc_OB_typ2 253 328
IPR006059 SBP 405 677
IPR003439 ABC_transporter-like_ATP-bd 2 136
No external refs found!