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Aliases : tig00020553_g10691.t1
Description : ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana
Gene families : OG_01_0000040 (OrthoFinder) Phylogenetic Tree(s): OG0000040_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00020553.201 | |
| Cluster | HCCA: Cluster_85 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre06.g299650 | 30779921, CLPR6 | ATP-dependent Clp protease proteolytic subunit 6,... | 0.03 | OrthoFinder | |
| Cre12.g486100 | 30791972, CLPP5 | Protein degradation.peptidase families.serine-type... | 0.02 | OrthoFinder | |
| Cre12.g500950 | 30792003, CLPP4 | Protein degradation.peptidase families.serine-type... | 0.02 | OrthoFinder | |
| Cre14.g619100 | 30776241, CLPR1 | Protein degradation.peptidase families.serine-type... | 0.03 | OrthoFinder | |
| Cz01g02300.t1 | No alias | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| Cz19g05120.t1 | No alias | Clp protease proteolytic subunit... | 0.01 | OrthoFinder | |
| EOD14390 | No alias | Putative endopeptidase Clp [Ensembl]. | 0.02 | OrthoFinder | |
| EOD16395 | No alias | Putative endopeptidase Clp [Ensembl]. | 0.03 | OrthoFinder | |
| EOD29710 | No alias | Putative endopeptidase Clp [Ensembl]. | 0.01 | OrthoFinder | |
| EOD35346 | No alias | Putative endopeptidase Clp [Ensembl]. | 0.01 | OrthoFinder | |
| EOD36731 | No alias | Putative endopeptidase Clp [Ensembl]. | 0.02 | OrthoFinder | |
| OT_09G02930.1 | No alias | Clp protease proteolytic subunit... | 0.01 | OrthoFinder | |
| OT_17G01480.1 | No alias | Clp protease proteolytic subunit... | 0.04 | OrthoFinder | |
| PTI_03G00950.1 | No alias | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| PTI_04G01800.1 | No alias | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| PTI_15G00750.1 | No alias | Clp protease proteolytic subunit... | 0.01 | OrthoFinder | |
| PTI_26G01270.1 | No alias | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| Sro178_g078080.1 | Contig275.g3533 | Protease proteolytic subunit | 0.04 | OrthoFinder | |
| Sro20_g014090.1 | Contig2954.g23439 | Protease proteolytic subunit | 0.02 | OrthoFinder | |
| Sro22_g015350.1 | Contig426.g5759 | Protease proteolytic subunit | 0.02 | OrthoFinder | |
| Transcript_contig_54370 | 54370 | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| Transcript_contig_56182 | 56182 | Clp protease proteolytic subunit... | 0.01 | OrthoFinder | |
| Transcript_contig_56330 | 56330 | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| Vocar.0006s0234.1 | 32894393 | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| XM_002502598.1 | MICPUN_108326, 108326 | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| XM_003057131.1 | MicpuC2_49501, 49501 | Clp protease proteolytic subunit... | 0.02 | OrthoFinder | |
| lcl|LHPG02000001.1_cds_PRW61527.1_10 | PRW61527 | ATP-dependent Clp protease proteolytic subunit chloroplastic | 0.02 | OrthoFinder | |
| lcl|LHPG02000012.1_cds_PRW44960.1_1979 | PRW44960 | Protease complex subunit 3 | 0.01 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498561.1_7514 | KAA8498561 | ATP-dependent Clp protease proteolytic subunit 2 | 0.04 | OrthoFinder | |
| lcl|VRMN01000011.1_cds_KAA8492008.1_5016 | KAA8492008 | ATP-dependent Clp protease proteolytic subunit 1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | IEP | Enrichment |
| BP | GO:0001932 | regulation of protein phosphorylation | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Enrichment |
| MF | GO:0004175 | endopeptidase activity | IEP | Enrichment |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Enrichment |
| MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | Enrichment |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Enrichment |
| MF | GO:0004784 | superoxide dismutase activity | IEP | Enrichment |
| CC | GO:0005743 | mitochondrial inner membrane | IEP | Enrichment |
| BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Enrichment |
| BP | GO:0006090 | pyruvate metabolic process | IEP | Enrichment |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0006479 | protein methylation | IEP | Enrichment |
| BP | GO:0006480 | N-terminal protein amino acid methylation | IEP | Enrichment |
| BP | GO:0006754 | ATP biosynthetic process | IEP | Enrichment |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0006801 | superoxide metabolic process | IEP | Enrichment |
| BP | GO:0006812 | cation transport | IEP | Enrichment |
| MF | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0008213 | protein alkylation | IEP | Enrichment |
| MF | GO:0008233 | peptidase activity | IEP | Enrichment |
| MF | GO:0008237 | metallopeptidase activity | IEP | Enrichment |
| MF | GO:0009055 | electron transfer activity | IEP | Enrichment |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Enrichment |
| CC | GO:0009521 | photosystem | IEP | Enrichment |
| CC | GO:0009523 | photosystem II | IEP | Enrichment |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Enrichment |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Enrichment |
| BP | GO:0015994 | chlorophyll metabolic process | IEP | Enrichment |
| BP | GO:0015995 | chlorophyll biosynthetic process | IEP | Enrichment |
| MF | GO:0016209 | antioxidant activity | IEP | Enrichment |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Enrichment |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Enrichment |
| MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | Enrichment |
| MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Enrichment |
| MF | GO:0016730 | oxidoreductase activity, acting on iron-sulfur proteins as donors | IEP | Enrichment |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Enrichment |
| BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Enrichment |
| BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Enrichment |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Enrichment |
| CC | GO:0019866 | organelle inner membrane | IEP | Enrichment |
| MF | GO:0019899 | enzyme binding | IEP | Enrichment |
| MF | GO:0019900 | kinase binding | IEP | Enrichment |
| MF | GO:0019901 | protein kinase binding | IEP | Enrichment |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Enrichment |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | Enrichment |
| BP | GO:0031399 | regulation of protein modification process | IEP | Enrichment |
| CC | GO:0031966 | mitochondrial membrane | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Enrichment |
| BP | GO:0042325 | regulation of phosphorylation | IEP | Enrichment |
| BP | GO:0042440 | pigment metabolic process | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043169 | cation binding | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0043549 | regulation of kinase activity | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0045859 | regulation of protein kinase activity | IEP | Enrichment |
| BP | GO:0046034 | ATP metabolic process | IEP | Enrichment |
| BP | GO:0046148 | pigment biosynthetic process | IEP | Enrichment |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Enrichment |
| MF | GO:0046872 | metal ion binding | IEP | Enrichment |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Enrichment |
| BP | GO:0050992 | dimethylallyl diphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0050993 | dimethylallyl diphosphate metabolic process | IEP | Enrichment |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Enrichment |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Enrichment |
| BP | GO:0051338 | regulation of transferase activity | IEP | Enrichment |
| BP | GO:0051726 | regulation of cell cycle | IEP | Enrichment |
| MF | GO:0051920 | peroxiredoxin activity | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| BP | GO:0065009 | regulation of molecular function | IEP | Enrichment |
| BP | GO:0071900 | regulation of protein serine/threonine kinase activity | IEP | Enrichment |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Enrichment |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1904029 | regulation of cyclin-dependent protein kinase activity | IEP | Enrichment |
| No external refs found! |