1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00020553.190

Cpa|evm.model.tig00020553.190 (tig00020553_g10680.t1)


Aliases : tig00020553_g10680.t1

Description : ABC transporter C family member 4 OS=Arabidopsis thaliana


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020553.190
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.84 tig00000158_g10189.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cre02.g103250 30785465, MRP5 Solute transport.primary active transport.ABC... 0.01 OrthoFinder
Cre07.g325761 30775279 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre13.g564900 30784450, MRP3 Solute transport.primary active transport.ABC... 0.05 OrthoFinder
Cre17.g734612 30781956, MRP2 ABC transporter C family member 14 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cz03g28180.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Cz05g17060.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.07 OrthoFinder
Dusal.0852s00004.1 33185428 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
EOD08599 No alias ABC transporter type 1, transmembrane domain; ABC... 0.05 OrthoFinder
EOD26066 No alias EF-hand domain; ABC transporter type 1, transmembrane... 0.03 OrthoFinder
EOD33714 No alias ABC transporter type 1, transmembrane domain; ABC... 0.05 OrthoFinder
EOD37777 No alias Multidrug resistance-associated protein, ABC superfamily... 0.02 OrthoFinder
PTI_03G04630.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
PTI_03G06590.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Sro1322_g262550.1 Contig3764.g28905 Multiple drug resistance-associated protein-like transporter 1 0.04 OrthoFinder
Sro183_g079600.1 Contig3056.g24305 Multiple drug resistance-associated protein-like transporter 1 0.04 OrthoFinder
Sro2938_g340630.1 Contig1091.g10559 Oligomycin resistance ATP-dependent permease YOR1 0.01 OrthoFinder
Sro399_g134960.1 Contig279.g3623 Multiple drug resistance-associated protein-like transporter 1 0.02 OrthoFinder
Sro61_g035030.1 Contig3112.g24756 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Transcript_contig_55599 55599 ABC transporter type 1, transmembrane domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56264 56264 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Transcript_contig_56405 56405 ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
Vocar.0028s0030.1 32895600 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
XM_002508173.1 MICPUN_94915, 94915 ATP-binding cassette superfamily 0.05 OrthoFinder
lcl|BLLF01003175.1_cds_GFH26596.1_21073 HaLaN_24770, GFH26596 ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56046.1_9960 PRW56046 Multidrug resistance-associated 1 isoform X1 0.03 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33949.1_2946 PRW33949 ABC transporter isoform A 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499894.1_8847 KAA8499894 Multidrug resistance-associated protein 1 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491694.1_5162 KAA8491694 Multidrug resistance-associated protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 71 107
IPR003439 ABC_transporter-like_ATP-bd 782 845
IPR011527 ABC1_TM_dom 374 609
No external refs found!