SymbC1.scaffold2076.5 (2076.5)

Aliases : 2076.5

Description : Nucleotide-sugar transporter; Short-chain dehydrogenase/reductase SDR; Ion transport domain [Interproscan].

Gene families : OG_01_0000279 (OrthoFinder) Phylogenetic Tree(s): OG0000279_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2076.5
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method	Actions
lcl\|LHPG02000005.1_cds_PRW58321.1_8181	PRW58321	CMP-sialic acid transporter 1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	Interproscan
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEA	Interproscan
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
BP	GO:0015780	nucleotide-sugar transmembrane transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEA	Interproscan
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901264	carbohydrate derivative transport	None	Extended
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Enrichment
BP	GO:0010109	regulation of photosynthesis	IEP	Enrichment
BP	GO:0010207	photosystem II assembly	IEP	Enrichment
MF	GO:0010242	oxygen evolving activity	IEP	Enrichment
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Enrichment
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Enrichment
BP	GO:0042549	photosystem II stabilization	IEP	Enrichment
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Enrichment
CC	GO:1990204	oxidoreductase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007271	Nuc_sug_transpt	17	315
IPR002347	SDR_fam	957	1138
IPR005821	Ion_trans_dom	1252	1346

External Links

No external refs found!

SymbC1.scaffold2076.5 (2076.5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation