SymbC1.scaffold2069.6 (2069.6)

Aliases : 2069.6

Description : ABC transporter-like; PFTB repeat; Methyltransferase domain; ABC transporter type 1, transmembrane domain; MFS/sugar transport protein [Interproscan].

Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2069.6
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
EOD33358	No alias	Putative ABC transporter [Ensembl].	0.01	OrthoFinder
OT_01G04640.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.01	OrthoFinder
PTI_07G02520.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
lcl\|BLLF01005028.1_cds_GFH30623.1_25100	HaLaN_29509, GFH30623	Hypothetical protein	0.04	OrthoFinder
lcl\|LHPG02000004.1_cds_PRW59338.1_7243	PRW59338	ATP-binding cassette transporter	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
MF	GO:0008234	cysteine-type peptidase activity	IEP	Enrichment
MF	GO:0008242	omega peptidase activity	IEP	Enrichment
BP	GO:0016579	protein deubiquitination	IEP	Enrichment
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0070646	protein modification by small protein removal	IEP	Enrichment
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Enrichment
MF	GO:0101005	deubiquitinase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1279	1427
IPR001330	PFTB_repeat	93	131
IPR001330	PFTB_repeat	308	339
IPR001330	PFTB_repeat	246	278
IPR001330	PFTB_repeat	140	181
IPR001330	PFTB_repeat	194	230
IPR011527	ABC1_TM_dom	431	538
IPR011527	ABC1_TM_dom	941	1211
IPR003439	ABC_transporter-like_ATP-bd	635	783

External Links

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SymbC1.scaffold2069.6 (2069.6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation