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  5. SymbC1.scaffold20.45

SymbC1.scaffold20.45 (20.45)


Aliases : 20.45

Description : TRAP transporter solute receptor DctP/TeaA; TRAP C4-dicarboxylate transport system permease DctM subunit; Malonyl-CoA decarboxylase, N-terminal; AMP-binding enzyme, C-terminal domain; TRAP transporter, small membrane protein DctQ; AMP-dependent synthetase/ligase; Malonyl-CoA decarboxylase, C-terminal [Interproscan].


Gene families : OG_01_0000081 (OrthoFinder) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold20.45
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre03.g211745 30786613 Probable acyl-activating enzyme 4 OS=Arabidopsis thaliana 0.02 OrthoFinder
SymbC1.scaffold4.1434 4.1434 AMP-binding enzyme, C-terminal domain; AMP-dependent... 0.02 OrthoFinder
SymbC1.scaffold7.850 7.850 Blue (type 1) copper domain; Right handed beta helix... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0006633 fatty acid biosynthetic process IEA Interproscan
MF GO:0050080 malonyl-CoA decarboxylase activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
BP GO:0051304 chromosome separation IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR035372 MCD_N 924 1008
IPR007956 Malonyl_CoA_deC_C 1011 1264
IPR025110 AMP-bd_C 1697 1772
IPR010656 DctM 615 825
IPR018389 DctP_fam 69 321
IPR007387 TRAP_DctQ 372 490
IPR000873 AMP-dep_Synth/Lig 1307 1688
No external refs found!