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  5. SymbC1.scaffold2.422

SymbC1.scaffold2.422 (2.422)


Aliases : 2.422

Description : Pterin 4 alpha carbinolamine dehydratase; Type II secretion system protein GspE, N-terminal; Type II/IV secretion system protein; Prokaryotic N-terminal methylation site; Type II secretion system protein GspF domain [Interproscan].


Gene families : OG_01_0000353 (OrthoFinder) Phylogenetic Tree(s): OG0000353_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.422
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1256 1.1256 Prokaryotic N-terminal methylation site; Type II... 0.02 OrthoFinder
SymbC1.scaffold2.1699 2.1699 Type II secretion system protein GspF domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold2.1824 2.1824 Type II secretion system protein GspE, N-terminal;... 0.02 OrthoFinder
SymbC1.scaffold2.1881 2.1881 Type II secretion system protein GspE, N-terminal; Type... 0.03 OrthoFinder
SymbC1.scaffold2.857 2.857 General secretion pathway protein K [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold20710.1 20710.1 Type II/IV secretion system protein; Type II secretion... 0.03 OrthoFinder
SymbC1.scaffold32.119 32.119 General secretion pathway protein K; Type II secretion... 0.01 OrthoFinder
SymbC1.scaffold32.5 32.5 PhoU domain; NolW-like; Type II/III secretion system... 0.03 OrthoFinder
SymbC1.scaffold4.276 4.276 Helix-turn-helix, HxlR type; NIPSNAP; GNAT domain;... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEA Interproscan
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Enrichment
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006177 GMP biosynthetic process IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006814 sodium ion transport IEP Enrichment
MF GO:0008239 dipeptidyl-peptidase activity IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0046037 GMP metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007831 T2SS_GspE_N 578 683
IPR007831 T2SS_GspE_N 1572 1674
IPR001482 T2SS/T4SS 1153 1398
IPR001482 T2SS/T4SS 729 994
IPR001482 T2SS/T4SS 1728 1989
IPR018076 T2SS_GspF_dom 2164 2287
IPR018076 T2SS_GspF_dom 2368 2521
IPR012902 N_methyl_site 2537 2558
IPR001533 Pterin_deHydtase 26 116
No external refs found!