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  5. SymbC1.scaffold2.2253

SymbC1.scaffold2.2253 (2.2253)


Aliases : 2.2253

Description : PDZ domain 6; Tail specific protease; Gcp-like domain; Methyltransferase domain 25 [Interproscan].


Gene families : OG_01_0001697 (OrthoFinder) Phylogenetic Tree(s): OG0001697_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.2253
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
EOD09982 No alias Gcp-like domain; Peptidyl-prolyl cis-trans isomerase,... 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496480.1_209 KAA8496480 Putative tRNA N6-adenosine threonylcarbamoyltransferase,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008236 serine-type peptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004560 alpha-L-fucosidase activity IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
MF GO:0015928 fucosidase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
MF GO:0045301 tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR005151 Tail-specific_protease 443 596
IPR041489 PDZ_6 347 400
IPR041698 Methyltransf_25 48 142
IPR000905 Gcp-like_dom 710 1002
No external refs found!