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  5. SymbC1.scaffold2.1948

SymbC1.scaffold2.1948 (2.1948)


Aliases : 2.1948

Description : Periplasmic binding protein; ABC transporter-like; Oxidoreductase, C-terminal; Oxidoreductase, N-terminal; ABC transporter, permease [Interproscan].


Gene families : OG_01_0002584 (OrthoFinder) Phylogenetic Tree(s): OG0002584_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2.1948
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2385 1.2385 Periplasmic binding protein [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold2.2088 2.2088 ABC transporter-like; Periplasmic binding protein; ABC... 0.03 OrthoFinder
SymbC1.scaffold2.2249 2.2249 ABC transporter-like [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold685.63 685.63 ABC transporter-like; ABC transporter, permease [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold7.326 7.326 ABC transporter, permease; ABC transporter-like;... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
CC GO:0005615 extracellular space IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006730 one-carbon metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0015159 polysaccharide transmembrane transporter activity IEP Enrichment
BP GO:0015774 polysaccharide transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Enrichment
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Enrichment
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Enrichment
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 864 1132
IPR001851 ABC_transp_permease 1146 1379
IPR025997 SBP_2_dom 1442 1699
IPR003439 ABC_transporter-like_ATP-bd 588 741
IPR000683 Gfo/Idh/MocA-like_OxRdtase_N 15 118
IPR003439 ABC_transporter-like_ATP-bd 334 482
IPR004104 Gfo/Idh/MocA-like_OxRdtase_C 141 203
No external refs found!