SymbC1.scaffold2.1824 (2.1824)

Aliases : 2.1824

Description : Type II secretion system protein GspE, N-terminal; Putative beta-barrel porin-2, OmpL-like. bbp2; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Histidine kinase/HSP90-like ATPase; Type II/IV secretion system protein; Signal transduction response regulator, receiver domain; STAS domain; Type II secretion system protein GspF domain [Interproscan].

Gene families : OG_01_0000353 (OrthoFinder) Phylogenetic Tree(s): OG0000353_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2.1824
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold1.1799	1.1799	PAS fold; Histidine kinase/HSP90-like ATPase; Signal...	0.03	OrthoFinder
SymbC1.scaffold2.1699	2.1699	Type II secretion system protein GspF domain [Interproscan].	0.04	OrthoFinder
SymbC1.scaffold2.1881	2.1881	Type II secretion system protein GspE, N-terminal; Type...	0.03	OrthoFinder
SymbC1.scaffold2.422	2.422	Pterin 4 alpha carbinolamine dehydratase; Type II...	0.02	OrthoFinder
SymbC1.scaffold2.857	2.857	General secretion pathway protein K [Interproscan].	0.03	OrthoFinder
SymbC1.scaffold20710.1	20710.1	Type II/IV secretion system protein; Type II secretion...	0.05	OrthoFinder
SymbC1.scaffold32.5	32.5	PhoU domain; NolW-like; Type II/III secretion system...	0.03	OrthoFinder
SymbC1.scaffold39805.1	39805.1	Type II/IV secretion system protein; Type II secretion...	0.02	OrthoFinder
SymbC1.scaffold4.276	4.276	Helix-turn-helix, HxlR type; NIPSNAP; GNAT domain;...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	IEP	Enrichment
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Enrichment
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	Enrichment
BP	GO:0006022	aminoglycan metabolic process	IEP	Enrichment
BP	GO:0006026	aminoglycan catabolic process	IEP	Enrichment
BP	GO:0006027	glycosaminoglycan catabolic process	IEP	Enrichment
BP	GO:0006817	phosphate ion transport	IEP	Enrichment
MF	GO:0008488	gamma-glutamyl carboxylase activity	IEP	Enrichment
MF	GO:0008745	N-acetylmuramoyl-L-alanine amidase activity	IEP	Enrichment
BP	GO:0009253	peptidoglycan catabolic process	IEP	Enrichment
MF	GO:0015002	obsolete heme-copper terminal oxidase activity	IEP	Enrichment
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Enrichment
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Enrichment
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Enrichment
MF	GO:0016830	carbon-carbon lyase activity	IEP	Enrichment
MF	GO:0016831	carboxy-lyase activity	IEP	Enrichment
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Enrichment
BP	GO:0017187	peptidyl-glutamic acid carboxylation	IEP	Enrichment
BP	GO:0018193	peptidyl-amino acid modification	IEP	Enrichment
BP	GO:0018200	peptidyl-glutamic acid modification	IEP	Enrichment
BP	GO:0018214	protein carboxylation	IEP	Enrichment
BP	GO:0022900	electron transport chain	IEP	Enrichment
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Enrichment
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	Enrichment
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Enrichment
BP	GO:0051189	prosthetic group metabolic process	IEP	Enrichment
MF	GO:0051287	NAD binding	IEP	Enrichment
MF	GO:0061783	peptidoglycan muralytic activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007831	T2SS_GspE_N	719	819
IPR011486	BBP2	1763	2062
IPR018076	T2SS_GspF_dom	1293	1414
IPR018076	T2SS_GspF_dom	1495	1613
IPR003594	HATPase_C	390	494
IPR001482	T2SS/T4SS	870	1134
IPR001789	Sig_transdc_resp-reg_receiver	500	584
IPR002645	STAS_dom	617	696
IPR003661	HisK_dim/P	274	339

External Links

No external refs found!

SymbC1.scaffold2.1824 (2.1824)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation