SymbC1.scaffold2.1111 (2.1111)

Aliases : 2.1111

Description : Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; Hemimethylated DNA-binding domain; Sialidase [Interproscan].

Gene families : OG_01_0008846 (OrthoFinder) Phylogenetic Tree(s): OG0008846_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2.1111
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method	Actions
SymbC1.scaffold37606.1	37606.1	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Enrichment
MF	GO:0004175	endopeptidase activity	IEP	Enrichment
MF	GO:0004252	serine-type endopeptidase activity	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
MF	GO:0008410	CoA-transferase activity	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011040	Sialidase	67	332
IPR011722	Hemimethylated_DNA-bd_dom	375	459

External Links

No external refs found!