SymbC1.scaffold2.1071 (2.1071)

Aliases : 2.1071

Description : MotA/TolQ/ExbB proton channel; Tetratricopeptide repeat; Biopolymer transport protein ExbD/TolR [Interproscan].

Gene families : OG_01_0001495 (OrthoFinder) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2.1071
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold1.1944	1.1944	Putative DNA-binding domain, bacteria; Pyrrolo-quinoline...	0.03	OrthoFinder
SymbC1.scaffold1.1970	1.1970	Biopolymer transport protein ExbD/TolR [Interproscan].	0.06	OrthoFinder
SymbC1.scaffold1.902	1.902	MotA/TolQ/ExbB proton channel; Tetratricopeptide repeat;...	0.03	OrthoFinder
SymbC1.scaffold20.212	20.212	MotA/TolQ/ExbB proton channel; TonB, C-terminal;...	0.05	OrthoFinder
SymbC1.scaffold4.159	4.159	MotA/TolQ/ExbB proton channel; TonB, C-terminal;...	0.03	OrthoFinder
SymbC1.scaffold9.483	9.483	YTV [Interproscan].	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0022857	transmembrane transporter activity	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0003978	UDP-glucose 4-epimerase activity	IEP	Enrichment
MF	GO:0004347	glucose-6-phosphate isomerase activity	IEP	Enrichment
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Enrichment
MF	GO:0004525	ribonuclease III activity	IEP	Enrichment
MF	GO:0004640	phosphoribosylanthranilate isomerase activity	IEP	Enrichment
MF	GO:0004803	transposase activity	IEP	Enrichment
BP	GO:0005996	monosaccharide metabolic process	IEP	Enrichment
BP	GO:0006006	glucose metabolic process	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006090	pyruvate metabolic process	IEP	Enrichment
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Enrichment
BP	GO:0006094	gluconeogenesis	IEP	Enrichment
BP	GO:0006096	glycolytic process	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006313	transposition, DNA-mediated	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006541	glutamine metabolic process	IEP	Enrichment
BP	GO:0006542	glutamine biosynthetic process	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006757	ATP generation from ADP	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0008312	7S RNA binding	IEP	Enrichment
MF	GO:0008324	cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0008653	lipopolysaccharide metabolic process	IEP	Enrichment
MF	GO:0008961	phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity	IEP	Enrichment
MF	GO:0008963	phospho-N-acetylmuramoyl-pentapeptide-transferase activity	IEP	Enrichment
MF	GO:0008987	quinolinate synthetase A activity	IEP	Enrichment
MF	GO:0009007	site-specific DNA-methyltransferase (adenine-specific) activity	IEP	Enrichment
MF	GO:0009008	DNA-methyltransferase activity	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0009103	lipopolysaccharide biosynthetic process	IEP	Enrichment
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	Enrichment
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	Enrichment
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	Enrichment
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	Enrichment
BP	GO:0009235	cobalamin metabolic process	IEP	Enrichment
BP	GO:0009236	cobalamin biosynthetic process	IEP	Enrichment
CC	GO:0009427	bacterial-type flagellum basal body, distal rod, L ring	IEP	Enrichment
CC	GO:0009428	bacterial-type flagellum basal body, distal rod, P ring	IEP	Enrichment
BP	GO:0009435	NAD biosynthetic process	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Enrichment
BP	GO:0016052	carbohydrate catabolic process	IEP	Enrichment
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Enrichment
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Enrichment
BP	GO:0019318	hexose metabolic process	IEP	Enrichment
BP	GO:0019319	hexose biosynthetic process	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0032196	transposition	IEP	Enrichment
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Enrichment
BP	GO:0032775	DNA methylation on adenine	IEP	Enrichment
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Enrichment
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0042157	lipoprotein metabolic process	IEP	Enrichment
BP	GO:0042158	lipoprotein biosynthetic process	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
BP	GO:0044283	small molecule biosynthetic process	IEP	Enrichment
BP	GO:0044780	bacterial-type flagellum assembly	IEP	Enrichment
BP	GO:0046031	ADP metabolic process	IEP	Enrichment
BP	GO:0046034	ATP metabolic process	IEP	Enrichment
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
BP	GO:0046939	nucleotide phosphorylation	IEP	Enrichment
CC	GO:0048500	signal recognition particle	IEP	Enrichment
BP	GO:0050794	regulation of cellular process	IEP	Enrichment
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Enrichment
BP	GO:0070925	organelle assembly	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002898	MotA_ExbB_proton_chnl	117	235
IPR003400	ExbD	274	396
IPR003400	ExbD	400	517

External Links

No external refs found!

SymbC1.scaffold2.1071 (2.1071)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation