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  5. SymbC1.scaffold1958.6

SymbC1.scaffold1958.6 (1958.6)


Aliases : 1958.6

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan].


Gene families : OG_01_0002711 (OrthoFinder) Phylogenetic Tree(s): OG0002711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1958.6
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.34 tig00020903_g15101.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder
Cre04.g214503 30791056 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cz09g18090.t1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.04 OrthoFinder
Sro1183_g250060.1 Contig238.g2905 40S ribosomal protein S12 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497927.1_6880 KAA8497927 40S ribosomal protein S12 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0010466 negative regulation of peptidase activity IEP Enrichment
BP GO:0010941 regulation of cell death IEP Enrichment
BP GO:0010951 negative regulation of endopeptidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016032 viral process IEP Enrichment
BP GO:0019079 viral genome replication IEP Enrichment
BP GO:0030162 regulation of proteolysis IEP Enrichment
CC GO:0030991 intraciliary transport particle A IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042981 regulation of apoptotic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043066 negative regulation of apoptotic process IEP Enrichment
BP GO:0043067 regulation of programmed cell death IEP Enrichment
BP GO:0043069 negative regulation of programmed cell death IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0045861 negative regulation of proteolysis IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051248 negative regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0051346 negative regulation of hydrolase activity IEP Enrichment
BP GO:0052547 regulation of peptidase activity IEP Enrichment
BP GO:0052548 regulation of endopeptidase activity IEP Enrichment
BP GO:0060548 negative regulation of cell death IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
CC GO:0071986 Ragulator complex IEP Enrichment
BP GO:2000116 regulation of cysteine-type endopeptidase activity IEP Enrichment
BP GO:2000117 negative regulation of cysteine-type endopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 27 120
No external refs found!