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  5. SymbC1.scaffold1935.5

SymbC1.scaffold1935.5 (1935.5)


Aliases : 1935.5

Description : PPM-type phosphatase domain [Interproscan].


Gene families : OG_01_0000114 (OrthoFinder) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1935.5
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000940.4 tig00000940_g5542.t1 Probable protein phosphatase 2C 65 OS=Oryza sativa... 0.01 OrthoFinder
Cpa|evm.model.tig00001094.8 tig00001094_g6979.t1 Protein modification.dephosphorylation.serine/threonine... 0.02 OrthoFinder
Cre01.g030200 30788822 Protein modification.dephosphorylation.serine/threonine... 0.02 OrthoFinder
Cre03.g170250 30788076 Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz13g16200.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
EOD19172 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
EOD33296 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Sro1310_g261630.1 Contig1983.g16977 2C and cyclic nucleotide-binding/kinase domain-containing protein 0.02 OrthoFinder
Sro749_g196760.1 Contig2460.g20133 Linked kinase-associated serine/threonine phosphatase 2C 0.01 OrthoFinder
SymbC1.scaffold4499.5 4499.5 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold4592.1 4592.1 PPM-type phosphatase domain [Interproscan]. 0.04 OrthoFinder
Transcript_contig_57788 57788 PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0925.1 32884403 PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
XM_003055847.1 MicpuC2_55126, 55126 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499838.1_8791 KAA8499838 Putative protein phosphatase 2C 65 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494593.1_3123 KAA8494593 Putative protein phosphatase 2C 64 0.01 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491653.1_5121 KAA8491653 Putative protein phosphatase 2C 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
MF GO:0005544 calcium-dependent phospholipid binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 148 380
No external refs found!