SymbC1.scaffold19.340 (19.340)


Aliases : 19.340

Description : Transposase, zinc-ribbon; Magnesium chelatase ChlI domain; ISXO2-like transposase domain; PAS fold-4; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Histidine kinase/HSP90-like ATPase; Signal transduction response regulator, receiver domain; Mg chelatase-related protein, C-terminal domain [Interproscan].


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold19.340
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Dusal.0119s00011.1 33195183 Signal transduction response regulator, receiver domain... 0.02 OrthoFinder
EOD13570 No alias Putative PAS domain sensor hybrid histidine kinase [Ensembl]. 0.01 OrthoFinder
SymbC1.scaffold1.334 1.334 Histidine kinase/HSP90-like ATPase; Signal transduction... 0.01 OrthoFinder
SymbC1.scaffold109.65 109.65 Histidine kinase/HSP90-like ATPase; Signal transduction... 0.03 OrthoFinder
SymbC1.scaffold172.9 172.9 PAS fold; Signal transduction histidine kinase,... 0.02 OrthoFinder
SymbC1.scaffold2.456 2.456 PAS fold-3; Signal transduction histidine kinase,... 0.05 OrthoFinder
SymbC1.scaffold22.248 22.248 PAS fold; Regulator of K+ conductance, C-terminal;... 0.04 OrthoFinder
SymbC1.scaffold22.9 22.9 PAS fold; Signal transduction histidine kinase,... 0.03 OrthoFinder
SymbC1.scaffold22346.1 22346.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold39.189 39.189 FecR protein; Signal transduction histidine kinase,... 0.04 OrthoFinder
SymbC1.scaffold39.50 39.50 Signal transduction response regulator, receiver domain... 0.04 OrthoFinder
SymbC1.scaffold4.1248 4.1248 HAMP domain; Signal transduction histidine kinase,... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006805 xenobiotic metabolic process IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0010033 response to organic substance IEP Enrichment
BP GO:0010124 phenylacetate catabolic process IEP Enrichment
MF GO:0015562 efflux transmembrane transporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032182 ubiquitin-like protein binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0042178 xenobiotic catabolic process IEP Enrichment
BP GO:0042537 benzene-containing compound metabolic process IEP Enrichment
MF GO:0043130 ubiquitin binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0045301 tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051304 chromosome separation IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR024445 Tnp_ISXO2-like 118 264
IPR013656 PAS_4 635 714
IPR000523 Mg_chelatse_chII-like_cat_dom 436 516
IPR024442 Transposase_Zn_ribbon 2 49
IPR003661 HisK_dim/P 739 801
IPR003594 HATPase_C 848 961
IPR001789 Sig_transdc_resp-reg_receiver 1113 1225
IPR025158 Mg_chelat-rel_C 532 624
No external refs found!