SymbC1.scaffold172.9 (172.9)

Aliases : 172.9

Description : PAS fold; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Histidine kinase/HSP90-like ATPase; Signal transduction response regulator, receiver domain; NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial [Interproscan].

Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold172.9
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold109.65	109.65	Histidine kinase/HSP90-like ATPase; Signal transduction...	0.03	OrthoFinder
SymbC1.scaffold19.340	19.340	Transposase, zinc-ribbon; Magnesium chelatase ChlI...	0.02	OrthoFinder
SymbC1.scaffold22.9	22.9	PAS fold; Signal transduction histidine kinase,...	0.03	OrthoFinder
SymbC1.scaffold4.1248	4.1248	HAMP domain; Signal transduction histidine kinase,...	0.03	OrthoFinder
lcl\|LHPG02000002.1_cds_PRW60699.1_4145	PRW60699	Hybrid sensor histidine kinase response regulator	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0022900	electron transport chain	IEA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Enrichment
MF	GO:0008484	sulfuric ester hydrolase activity	IEP	Enrichment
MF	GO:0015928	fucosidase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003661	HisK_dim/P	347	413
IPR003594	HATPase_C	458	566
IPR006885	NADH_UbQ_FeS_4_mit	757	851
IPR001789	Sig_transdc_resp-reg_receiver	607	719

External Links

No external refs found!

SymbC1.scaffold172.9 (172.9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation