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  5. SymbC1.scaffold167.12

SymbC1.scaffold167.12 (167.12)


Aliases : 167.12

Description : Glycosyl transferase, family 1; Starch synthase, catalytic domain [Interproscan].


Gene families : OG_01_0000262 (OrthoFinder) Phylogenetic Tree(s): OG0000262_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold167.12
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Cre04.g215150 30791328, SSS1 Enzyme classification.EC_2 transferases.EC_2.4... 0.02 OrthoFinder
Cre17.g721500 30782074 Carbohydrate metabolism.starch... 0.02 OrthoFinder
Vocar.0001s1467.1 32885239 Glycosyl transferase, family 1; Starch synthase,... 0.02 OrthoFinder
XM_002500243.1 MICPUN_104736, 104736 Glycosyltransferase family 5 protein (GBSSI) 0.02 OrthoFinder
lcl|BLLF01000170.1_cds_GFH08586.1_3063 HaLaN_03571, GFH08586 Starch synthase, chloroplastic/amyloplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
CC GO:0005576 extracellular region IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0030248 cellulose binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 48 92
IPR013534 Starch_synth_cat_dom 96 187
IPR001296 Glyco_trans_1 243 367
No external refs found!