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  5. SymbC1.scaffold1613.2

SymbC1.scaffold1613.2 (1613.2)


Aliases : 1613.2

Description : C-5 cytosine methyltransferase; Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000169 (OrthoFinder) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1613.2
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold13636.2 13636.2 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold1709.3 1709.3 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold2231.1 2231.1 C-5 cytosine methyltransferase; Ribonuclease H domain;... 0.03 OrthoFinder
SymbC1.scaffold2236.1 2236.1 C-5 cytosine methyltransferase; Reverse transcriptase... 0.08 OrthoFinder
SymbC1.scaffold262.5 262.5 Ribonuclease H domain; Reverse transcriptase domain... 0.05 OrthoFinder
SymbC1.scaffold4890.1 4890.1 Reverse transcriptase domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold5005.1 5005.1 Reverse transcriptase domain [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold68.7 68.7 Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold7591.2 7591.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.03 OrthoFinder
SymbC1.scaffold838.1 838.1 Reverse transcriptase domain [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold874.6 874.6 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold8956.2 8956.2 Reverse transcriptase domain [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 2128 2334
IPR001525 C5_MeTfrase 106 285
No external refs found!